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  • Getting Started!
  • 1. Greene HPC
    • 1.1. Overview
    • 1.2. Software
    • 1.3. Hardware
    • 1.4. Network
    • 1.5. Architecture
    • 1.6. Workflow
  • 2. Access
    • 2.1. NYU VPN
    • 2.2. SSH
      • 2.2.1. Saving SSH Keys
    • 2.3. Web Interface
      • 2.3.1. Connection to OOD
      • 2.3.2. Access the Shell
      • 2.3.3. Interactive Applications
  • 3. Storage
    • 3.1. File Systems
    • 3.2. Quota Utilization
    • 3.3. Data Transfer
    • 3.4. HPC Storage Status
  • 4. Data Sharing
    • 4.1. View Permissions
    • 4.2. Modify Permissions
      • 4.2.1. Examples
        • 4.2.1.1. Share a file
        • 4.2.1.2. Share a directory and all its files
        • 4.2.1.3. Share all new files in a directory by default
        • 4.2.1.4. Remove permissions for a user
        • 4.2.1.5. Remove all permissions
  • 5. Software Modules
    • 5.1. Commands
    • 5.2. Examples
  • 6. Anaconda
    • 6.1. One Time Setup
    • 6.2. Create environment
    • 6.3. Activate conda
    • 6.4. Installing Packages
    • 6.5. Cheatsheet
      • 6.5.1. Quick Start
      • 6.5.2. Package Management
      • 6.5.3. Environment Management
      • 6.5.4. Maintenance
  • 7. Job Management
    • 7.1. Batch Jobs
      • 7.1.1. Batch Job Script
        • 7.1.1.1. Syntax
        • 7.1.1.2. Options
      • 7.1.2. Submitting a batch Job
      • 7.1.3. Reading Outputs
      • 7.1.4. Examples
    • 7.2. Interactive Sessions
    • 7.3. Checking Job Status
      • 7.3.1. Running or Pending Job
      • 7.3.2. Completed Job
    • 7.4. Cancelling a Job
    • 7.5. Job Resource Usage Statistics
      • 7.5.1. Completed Job
      • 7.5.2. Running job
      • 7.5.3. Visualize Job Statistics
    • 7.6. Resource Limitations
      • 7.6.1. Job Limitations
      • 7.6.2. CPU, GPU, RAM Limitations
      • 7.6.3. CPU with GPU Limitations
    • 7.7. HPC Resource Status
  • 8. Jupyter Notebooks
    • 8.1. One time Setup
    • 8.2. Add Jupyter Kernel
    • 8.3. Launch Jupyter Notebook
  • 9. Visual Studio Code
    • 9.1. Setup
      • 9.1.1. Download and Install
      • 9.1.2. Connecting to HPC cluster
    • 9.2. Workspace Management
    • 9.3. Recommended Extensions
  • 10. FAQs
    • 10.1. What are Login Nodes?
    • 10.2. What are Compute Nodes?
    • 10.3. What resources to ask for (and how much)?
    • 10.4. Why my jobs are queued?
    • 10.5. How to find more information on my jobs?
    • 10.6. How busy is the cluster?
    • 10.7. Should I do Web scraping, Data mining from websites on HPC?
    • 10.8. How to check if I am wasting RAM and CPU?
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Developed by Anant Singh (GitHub, LinkedIn) | New York University | Built from HPC Official Documentaion.